satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
Accurate sample inference from amplicon data with single nucleotide resolution
dplyr: A grammar of data manipulation
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Easy interactive web applications with R
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
Make Complex Heatmaps
An implementation of the Grammar of Graphics in R
Simple Features for R
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Inferring CNV from Single-Cell RNA-Seq
R package for detecting doublets in single-cell RNA sequencing data
R's data.table package extends data.frame:
renv: Project environments for R.
📊 A universal enrichment tool for interpreting omics data
Tools to make an R developer's life easier
Dynamic Documents for R